# relag.kernels

## Kernel variant selector

```{eval-rst}
.. automodule:: relag.kernels
   :members:
```

## relag.kernels.alignments

Protein or Nucleotide sequence aligners and their configuration enums.

```{eval-rst}
.. automodule:: relag.kernels.alignments
   :members:
   :member-order: bysource
```

## relag.kernels.molecules

Molecules Tanimoto kernels.

```{eval-rst}
.. automodule:: relag.kernels.molecules
   :members:
   :member-order: bysource
```

## relag.kernels.structures

Protein structure kernels (USalign TM-score).

```{eval-rst}
.. automodule:: relag.kernels.structures
   :members:
   :member-order: bysource
```

## relag.kernels.protspam

ProtSpaM-style spaced-word kernel for protein sequences.

```{eval-rst}
.. automodule:: relag.kernels.protspam
   :members:
   :member-order: bysource
```

## relag.kernels.vectors

Vector distance kernels.

```{eval-rst}
.. automodule:: relag.kernels.vectors
   :members:
   :member-order: bysource
```